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Joseph Mburu, Naomi Chebet and Ruth Adhiambo (2025) Point-of-care loop-mediated isothermal amplification for malaria diagnosis in remote clinics. Tropical Medicine Advances - 2025 Special Collection. https://quorumpress.org/papers/point-care-loop-mediated-ylla2

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Published in Tropical Medicine Advances - 2025 Special Collection. This article was peer reviewed before publication.

Tropical Medicine Advances - 2025 Special CollectionPaper No. 4BSN6J
Tropical Health Research Network
Full paper

Point-of-care loop-mediated isothermal amplification for malaria diagnosis in remote clinics

Joseph Mburu1*, Naomi Chebet2, Ruth Adhiambo1

1 Tropical Health Research Network, Nairobi, Kenya
2 Savannah Institute of Public Health, Nairobi, Kenya
* Corresponding author
Received 18 June 2025Published 18 June 2025CC-BY-4.0

Abstract

Microscopy and rapid diagnostic tests each miss a share of low-parasitaemia malaria infections. We evaluated a battery-powered loop-mediated isothermal amplification (LAMP) assay against nested PCR across five remote clinics. LAMP achieved 96.4 percent sensitivity and 98.1 percent specificity for Plasmodium falciparum, detecting infections missed by rapid tests in 11 percent of febrile patients. Turnaround was under 45 minutes without cold-chain reagents. We discuss operator training and quality assurance needed for routine use.

Keywords: Malaria, LAMP, Point-of-care diagnostics, Plasmodium falciparum

Cite as: Joseph Mburu, Naomi Chebet, & Ruth Adhiambo (2025). Point-of-care loop-mediated isothermal amplification for malaria diagnosis in remote clinics. Tropical Medicine Advances - 2025 Special Collection. https://quorumpress.org/papers/point-care-loop-mediated-ylla2

© 2025 Mburu, Chebet and Adhiambo. Open access under CC BY 4.0.

1. Background

Prompt, accurate malaria diagnosis at the point of care underpins both effective treatment and the stewardship of antimalarials [1]. Microscopy is skill-dependent, and rapid diagnostic tests (RDTs) lose sensitivity at low parasite densities and where hrp2 deletions occur [2]. Loop-mediated isothermal amplification (LAMP) offers near-PCR sensitivity without thermal cycling, making it a candidate for remote clinics [3]. We evaluated a battery-powered LAMP assay against nested PCR across five remote clinics.

2. Methods

Febrile patients at five clinics were tested in parallel with the LAMP assay, an RDT, and nested PCR as the reference standard. Taking PCR as truth, we computed sensitivity and specificity

Se=TPTP+FN,Sp=TNTN+FP,\text{Se} = \frac{TP}{TP + FN}, \qquad \text{Sp} = \frac{TN}{TN + FP},

with 95 percent confidence intervals, and recorded time from sample to result. Operators were clinic staff trained over two days, with weekly external quality-control samples.

3. Results

Against PCR on 1,043 patients, LAMP reached 96.4 percent sensitivity and 98.1 percent specificity, well above the RDT, and returned results in under 45 minutes without cold-chain reagents (Table 1). LAMP detected low-parasitaemia infections missed by the RDT in 11 percent of febrile patients.

Table 1. Diagnostic accuracy against nested PCR (n = 1,043).

Test

Sensitivity (%)

Specificity (%)

Time to result

LAMP

96.4

98.1

< 45 min

Rapid diagnostic test

82.7

97.5

< 20 min

Microscopy

88.1

96.0

30-60 min

4. Discussion and conclusion

Portable LAMP closes much of the sensitivity gap between field tests and PCR while remaining deployable in clinics without laboratories. The trade-offs are a longer time to result than an RDT and the need for trained operators and quality assurance to avoid contamination-driven false positives. Where low-density infections are common, LAMP is a viable point-of-care option; RDTs remain appropriate where speed is paramount and parasitaemia is typically high.

References

[1] World Health Organization, “World Malaria Report,” 2024.

[2] M. Kavanagh et al., “hrp2/3 deletions and false-negative malaria RDTs: a systematic review,” The Lancet Infectious Diseases, vol. 22, pp. e136-e148, 2022.

[3] P. Han et al., “Loop-mediated isothermal amplification for malaria diagnosis: a meta-analysis,” Malaria Journal, vol. 19, pp. 1-13, 2020.

Cite this paper

Joseph Mburu, Naomi Chebet, Ruth Adhiambo. Point-of-care loop-mediated isothermal amplification for malaria diagnosis in remote clinics. Tropical Medicine Advances - 2025 Special Collection, 2025. https://quorumpress.org/papers/point-care-loop-mediated-ylla2

Publication ID: ylla2